Abundant dsRNA picobirnaviruses show little geographic or host association in terrestrial systems.

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dc.citation.volume112
dc.contributor.authorKnox MA
dc.contributor.authorWierenga J
dc.contributor.authorBiggs PJ
dc.contributor.authorGedye K
dc.contributor.authorAlmeida V
dc.contributor.authorHall R
dc.contributor.authorKalema-Zikusoka G
dc.contributor.authorRubanga S
dc.contributor.authorNgabirano A
dc.contributor.authorValdivia-Granda W
dc.contributor.authorHayman DTS
dc.coverage.spatialNetherlands
dc.date.accessioned2024-06-12T03:23:59Z
dc.date.available2024-06-12T03:23:59Z
dc.date.issued2023-08
dc.description.abstractPicobirnaviruses are double-stranded RNA viruses known from a wide range of host species and locations but with unknown pathogenicity and host relationships. Here, we examined the diversity of picobirnaviruses from cattle and gorillas within and around Bwindi Impenetrable Forest National Park (BIFNP), Uganda, where wild and domesticated animals and humans live in relatively close contact. We use metagenomic sequencing with bioinformatic analyses to examine genetic diversity. We compared our findings to global Picobirnavirus diversity using clustering-based analyses. Picobirnavirus diversity at Bwindi was high, with 14 near-complete RdRp and 15 capsid protein sequences, and 497 new partial viral sequences recovered from 44 gorilla samples and 664 from 16 cattle samples. Sequences were distributed throughout a phylogenetic tree of globally derived picobirnaviruses. The relationship with Picobirnavirus diversity and host taxonomy follows a similar pattern to the global dataset, generally lacking pattern with either host or geography.
dc.description.confidentialfalse
dc.edition.editionAugust 2023
dc.format.pagination105456-
dc.identifier.author-urlhttps://www.ncbi.nlm.nih.gov/pubmed/37257800
dc.identifier.citationKnox MA, Wierenga J, Biggs PJ, Gedye K, Almeida V, Hall R, Kalema-Zikusoka G, Rubanga S, Ngabirano A, Valdivia-Granda W, Hayman DTS. (2023). Abundant dsRNA picobirnaviruses show little geographic or host association in terrestrial systems.. Infect Genet Evol. 112. (pp. 105456-).
dc.identifier.doi10.1016/j.meegid.2023.105456
dc.identifier.eissn1567-7257
dc.identifier.elements-typejournal-article
dc.identifier.issn1567-1348
dc.identifier.number105456
dc.identifier.piiS1567-1348(23)00054-0
dc.identifier.urihttps://mro.massey.ac.nz/handle/10179/69810
dc.languageeng
dc.publisherElsevier
dc.publisher.urihttps://www.sciencedirect.com/science/article/pii/S1567134823000540?via%25
dc.relation.isPartOfInfect Genet Evol
dc.rights(c) 2023 The Author/s
dc.rightsCC BY 4.0
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectBioinformatics
dc.subjectGorilla
dc.subjectMetagenomics
dc.subjectPicobirnaviridae
dc.subjectUganda
dc.subjectHumans
dc.subjectAnimals
dc.subjectCattle
dc.subjectPicobirnavirus
dc.subjectPhylogeny
dc.subjectRNA, Double-Stranded
dc.subjectGorilla gorilla
dc.subjectAnimals, Domestic
dc.titleAbundant dsRNA picobirnaviruses show little geographic or host association in terrestrial systems.
dc.typeJournal article
pubs.elements-id461863
pubs.organisational-groupOther
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