Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package.

Simple item page
dc.citation.issue10
dc.citation.volume15
dc.contributor.authorAngelin-Bonnet O
dc.contributor.authorVignes M
dc.contributor.authorBiggs PJ
dc.contributor.authorBaldwin S
dc.contributor.authorThomson S
dc.contributor.editorHojsgaard D
dc.coverage.spatialSwitzerland
dc.date.accessioned2024-11-06T19:23:40Z
dc.date.available2024-11-06T19:23:40Z
dc.date.issued2024-09-25
dc.description.abstractBackground/Objectives: We present hidecan, an R package for generating visualisations that summarise the results of one or more genome-wide association studies (GWAS) and differential expression analyses, as well as manually curated candidate genes, e.g., extracted from the literature. This tool is applicable to all ploidy levels; we notably provide functionalities to facilitate the visualisation of GWAS results obtained for autotetraploid organisms with the GWASpoly package. Results: We illustrate the capabilities of hidecan with examples from two autotetraploid potato datasets. Conclusions: The hidecan package is implemented in R and is publicly available on the CRAN repository and on GitHub. A description of the package, as well as a detailed tutorial, is made available alongside the package. It is also part of the VIEWpoly tool for the visualisation and exploration of results from polyploids computational tools.
dc.description.confidentialfalse
dc.edition.editionOctober 2024
dc.format.pagination1244-
dc.identifier.author-urlhttps://www.ncbi.nlm.nih.gov/pubmed/39457368
dc.identifier.citationAngelin-Bonnet O, Vignes M, Biggs PJ, Baldwin S, Thomson S. (2024). Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package.. Genes (Basel). 15. 10. (pp. 1244-).
dc.identifier.doi10.3390/genes15101244
dc.identifier.eissn2073-4425
dc.identifier.elements-typejournal-article
dc.identifier.issn2073-4425
dc.identifier.number1244
dc.identifier.piigenes15101244
dc.identifier.urihttps://mro.massey.ac.nz/handle/10179/71935
dc.languageeng
dc.publisherMDPI (Basel, Switzerland)
dc.publisher.urihttps://www.mdpi.com/2073-4425/15/10/1244
dc.relation.isPartOfGenes (Basel)
dc.rights(c) 2024 The Author/s
dc.rightsCC BY 4.0
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectR package
dc.subjectautotetraploid
dc.subjectdifferential expression
dc.subjectgenome-wide association studies
dc.subjectvisualisation
dc.subjectGenome-Wide Association Study
dc.subjectSolanum tuberosum
dc.subjectSoftware
dc.subjectHumans
dc.subjectComputational Biology
dc.titleVisual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package.
dc.typeJournal article
pubs.elements-id492106
pubs.organisational-groupCollege of Health
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