Massey Research Online - Browsing by Author "Battley PF"

Browsing by Author "Battley PF"

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Author Correction: Dense sampling of bird diversity increases power of comparative genomics.
(2021-04) Feng S; Stiller J; Deng Y; Armstrong J; Fang Q; Reeve AH; Xie D; Chen G; Guo C; Faircloth BC; Petersen B; Wang Z; Zhou Q; Diekhans M; Chen W; Andreu-Sánchez S; Margaryan A; Howard JT; Parent C; Pacheco G; Sinding M-HS; Puetz L; Cavill E; Ribeiro ÂM; Eckhart L; Fjeldså J; Hosner PA; Brumfield RT; Christidis L; Bertelsen MF; Sicheritz-Ponten T; Tietze DT; Robertson BC; Song G; Borgia G; Claramunt S; Lovette IJ; Cowen SJ; Njoroge P; Dumbacher JP; Ryder OA; Fuchs J; Bunce M; Burt DW; Cracraft J; Meng G; Hackett SJ; Ryan PG; Jønsson KA; Jamieson IG; da Fonseca RR; Braun EL; Houde P; Mirarab S; Suh A; Hansson B; Ponnikas S; Sigeman H; Stervander M; Frandsen PB; van der Zwan H; van der Sluis R; Visser C; Balakrishnan CN; Clark AG; Fitzpatrick JW; Bowman R; Chen N; Cloutier A; Sackton TB; Edwards SV; Foote DJ; Shakya SB; Sheldon FH; Vignal A; Soares AER; Shapiro B; González-Solís J; Ferrer-Obiol J; Rozas J; Riutort M; Tigano A; Friesen V; Dalén L; Urrutia AO; Székely T; Liu Y; Campana MG; Corvelo A; Fleischer RC; Rutherford KM; Gemmell NJ; Dussex N; Mouritsen H; Thiele N; Delmore K; Liedvogel M; Franke A; Hoeppner MP; Krone O; Fudickar AM; Milá B; Ketterson ED; Fidler AE; Friis G; Parody-Merino ÁM; Battley PF; Cox MP; Lima NCB; Prosdocimi F; Parchman TL; Schlinger BA; Loiselle BA; Blake JG; Lim HC; Day LB; Fuxjager MJ; Baldwin MW; Braun MJ; Wirthlin M; Dikow RB; Ryder TB; Camenisch G; Keller LF; DaCosta JM; Hauber ME; Louder MIM; Witt CC; McGuire JA; Mudge J; Megna LC; Carling MD; Wang B; Taylor SA; Del-Rio G; Aleixo A; Vasconcelos ATR; Mello CV; Weir JT; Haussler D; Li Q; Yang H; Wang J; Lei F; Rahbek C; Gilbert MTP; Graves GR; Jarvis ED; Paten B; Zhang G
In Supplementary Table 1 of this Article, 23 samples (B10K-DU-029-32, B10K-DU-029-33, B10K-DU-029-36 to B10K-DU-029-44, B10K-DU- 029-46, B10K-DU-029-47, B10K-DU-029-49 to B10K-DU-029-53, B10K-DU- 029-75 to B10K-DU-029-77, B10K-DU-029-80, and B10K-DU-030-03; styled in boldface in the revised table) were assigned to the incorrect institution. Supplementary Table 1 has been amended to reflect the correct source institution for these samples, and associated data (tissue, museum ID/source specimen ID, site, state/province, latitude, longitude, date collected and sex) have been updated accordingly. The original table is provided as Supplementary Information to this Amendment, and the original Article has been corrected online.
Diet plasticity and links to changing foraging behaviour in the conservation of subantarctic yellow-eyed penguins (Megadyptes antipodes)
(John Wiley and Sons, Ltd, 2022-05-17) Muller CG; Chilvers BL; French RK; Battley PF
1. Diet is a key factor affecting seabird foraging behaviour, ultimately influencing survival, breeding success and long-term population viability. The density and distribution of prey species in the marine environment are influenced by many factors including climate effects such as El Niño southern oscillation and climate change that alter water temperature. 2. While poor quality diet has been implicated as a contributing factor in the decline of some mainland New Zealand yellow-eyed penguin (Megadyptes antipodes) populations, little is known about their diet in the subantarctic where the majority of the species breeds. 3. Blood and feather samples (n = 63) were collected for stable isotope analysis of diet from 25 individual birds breeding on subantarctic Enderby Island, Auckland Islands, New Zealand, from 2015 to 2018. 4. Diet data were analysed by factors such as breeding year, sex and foraging behaviour. Stable isotope analysis demonstrated significant changes in diet during each year of the study, which included both El Niño and La Niña conditions. 5. Diet during El Niño conditions comprised lower trophic level prey, which were more benthic, and found closer to shore than diet during La Niña. 6. Coupled with the reported variable breeding success of yellow-eyed penguins in the subantarctic, variable diet suggests prey availability is likely to be a limiting factor in some years. Prey availability is therefore expected to be a major influence on survival and breeding success of this endangered species in the future, particularly if the effects of climate change become more pronounced. 7. This research highlights an urgent conservation need to identify prey species utilized by the southern population, along with their distribution in time and space, and therefore also the effect of diet on long-term population stability.
Differences in body composition between urban and rural Mallards, Anas platyrhynchos
(1/01/2020) Jarman TE; Gartrell BD; Battley PF
Anthropogenic feeding of wildlife provides a valuable opportunity for people to engage with animals, but such feeding has the potential to be detrimental to the species involved. Ducks are frequently fed at urban ponds globally, yet the health impacts of an urban lifestyle for birds are poorly documented. We studied urban and rural Mallards (Anas platyrhynchos) in the Manawatū-Whanganui region (New Zealand). Mallards are opportunistic omnivores that have a phenotypically flexible gastrointestinal system. As urban Mallards consume considerable amounts of low-fibre, high carbohydrate foods via anthropogenic feeding, we predicted that urban Mallards would have smaller gastrointestinal tract organs and higher fat levels than rural ducks. We compared gross body composition of Mallards in a modified environment with high levels of feeding by humans and in rural habitats. We also evaluated other health-associated aspects including fat deposit size, liver fat content and haemosiderin (liver iron deposit) levels. Contrary to predictions, urban birds had larger gizzards and caeca and were no fatter than rural birds; rural birds additionally had larger pectoralis major muscles. These differences are probably associated with broader ecological and behavioural factors than with the provision of anthropogenic food per se [in particular the presence of hard foods (acorns and nuts) for urban birds, and higher flight activity of rural birds]. Longer caeca in urban birds could, however, relate to immunity rather than microbial fermentation of cellulose. Overall, while the nature of the local environment does affect Mallard physiology, no detrimental effects of urban living were evident in this study.
Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds.
(2016) Weiser EL; Lanctot RB; Brown SC; Alves JA; Battley PF; Bentzen R; Bêty J; Bishop MA; Boldenow M; Bollache L; Casler B; Christie M; Coleman JT; Conklin JR; English WB; Gates HR; Gilg O; Giroux M-A; Gosbell K; Hassell C; Helmericks J; Johnson A; Katrínardóttir B; Koivula K; Kwon E; Lamarre J-F; Lang J; Lank DB; Lecomte N; Liebezeit J; Loverti V; McKinnon L; Minton C; Mizrahi D; Nol E; Pakanen V-M; Perz J; Porter R; Rausch J; Reneerkens J; Rönkä N; Saalfeld S; Senner N; Sittler B; Smith PA; Sowl K; Taylor A; Ward DH; Yezerinac S; Sandercock BK
BACKGROUND: Geolocators are useful for tracking movements of long-distance migrants, but potential negative effects on birds have not been well studied. We tested for effects of geolocators (0.8-2.0 g total, representing 0.1-3.9 % of mean body mass) on 16 species of migratory shorebirds, including five species with 2-4 subspecies each for a total of 23 study taxa. Study species spanned a range of body sizes (26-1091 g) and eight genera, and were tagged at 23 breeding and eight nonbreeding sites. We compared breeding performance and return rates of birds with geolocators to control groups while controlling for potential confounding variables. RESULTS: We detected negative effects of tags for three small-bodied species. Geolocators reduced annual return rates for two of 23 taxa: by 63 % for semipalmated sandpipers and by 43 % for the arcticola subspecies of dunlin. High resighting effort for geolocator birds could have masked additional negative effects. Geolocators were more likely to negatively affect return rates if the total mass of geolocators and color markers was 2.5-5.8 % of body mass than if tags were 0.3-2.3 % of body mass. Carrying a geolocator reduced nest success by 42 % for semipalmated sandpipers and tripled the probability of partial clutch failure in semipalmated and western sandpipers. Geolocators mounted perpendicular to the leg on a flag had stronger negative effects on nest success than geolocators mounted parallel to the leg on a band. However, parallel-band geolocators were more likely to reduce return rates and cause injuries to the leg. No effects of geolocators were found on breeding movements or changes in body mass. Among-site variation in geolocator effect size was high, suggesting that local factors were important. CONCLUSIONS: Negative effects of geolocators occurred only for three of the smallest species in our dataset, but were substantial when present. Future studies could mitigate impacts of tags by reducing protruding parts and minimizing use of additional markers. Investigators could maximize recovery of tags by strategically deploying geolocators on males, previously marked individuals, and successful breeders, though targeting subsets of a population could bias the resulting migratory movement data in some species.
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium
(John Wiley and Sons, Ltd, 2022-04) Conklin JR; Verkuil YI; Battley PF; Hassell CJ; ten Horn J; Johnson JA; Tomkovich PS; Baker AJ; Piersma T; Fontaine MC; qu Y
Present-day ecology and population structure are the legacies of past climate and habitat perturbations, and this is particularly true for species that are widely distributed at high latitudes. The red knot, Calidris canutus, is an arctic-breeding, long-distance migratory shorebird with six recognized subspecies defined by differences in morphology, migration behavior, and annual cycle phenology, in a global distribution thought to have arisen just since the last glacial maximum (LGM). We used nextRAD sequencing of 10,881 single-nucleotide polymorphisms (SNPs) to assess the neutral genetic structure and phylogeographic history of 172 red knots representing all known global breeding populations. Using population genetics approaches, including model-based scenario-testing in an approximate Bayesian computation (ABC) framework, we infer that red knots derive from two main lineages that diverged ca. 34,000 years ago, and thus most probably persisted at the LGM in both Palearctic and Nearctic refugia, followed by at least two instances of secondary contact and admixture. Within two Beringian subspecies (C. c. roselaari and rogersi), we detected previously unknown genetic structure among sub-populations sharing a migratory flyway, reflecting additional complexity in the phylogeographic history of the region. Conversely, we found very weak genetic differentiation between two Nearctic populations (rufa and islandica) with clearly divergent migratory phenotypes and little or no apparent contact throughout the annual cycle. Together, these results suggest that relative gene flow among migratory populations reflects a complex interplay of historical, geographical, and ecological factors.
High dispersal ability versus migratory traditions: Fine-scale population structure and post-glacial colonisation in bar-tailed godwits.
(John Wiley and Sons Ltd, 2024-07-06) Conklin JR; Verkuil YI; Lefebvre MJM; Battley PF; Bom RA; Gill RE; Hassell CJ; Ten Horn J; Ruthrauff DR; Tibbitts TL; Tomkovich PS; Warnock N; Piersma T; Fontaine MC; Hansen MM
In migratory animals, high mobility may reduce population structure through increased dispersal and enable adaptive responses to environmental change, whereas rigid migratory routines predict low dispersal, increased structure, and limited flexibility to respond to change. We explore the global population structure and phylogeographic history of the bar-tailed godwit, Limosa lapponica, a migratory shorebird known for making the longest non-stop flights of any landbird. Using nextRAD sequencing of 14,318 single-nucleotide polymorphisms and scenario-testing in an Approximate Bayesian Computation framework, we infer that bar-tailed godwits existed in two main lineages at the last glacial maximum, when much of their present-day breeding range persisted in a vast, unglaciated Siberian-Beringian refugium, followed by admixture of these lineages in the eastern Palearctic. Subsequently, population structure developed at both longitudinal extremes: in the east, a genetic cline exists across latitude in the Alaska breeding range of subspecies L. l. baueri; in the west, one lineage diversified into three extant subspecies L. l. lapponica, taymyrensis, and yamalensis, the former two of which migrate through previously glaciated western Europe. In the global range of this long-distance migrant, we found evidence of both (1) fidelity to rigid behavioural routines promoting fine-scale geographic population structure (in the east) and (2) flexibility to colonise recently available migratory flyways and non-breeding areas (in the west). Our results suggest that cultural traditions in highly mobile vertebrates can override the expected effects of high dispersal ability on population structure, and provide insights for the evolution and flexibility of some of the world's longest migrations.
Interacting Roles of Breeding Geography and Early-Life Settlement in Godwit Migration Timing
(Frontiers Media SA, 17/03/2020) Battley PF; Conklin JR; Parody-Merino ÁM; Langlands PA; Southey I; Burns T; Melville DS; Schuckard R; Riegen AC; Potter MA
While avian migration timing is clearly influenced by both breeding and non-breeding geography, it is challenging to identify the relative and interdependent roles of endogenous programs, early-life experience, and carry-over effects in the development of adult annual schedules. Bar-tailed godwits Limosa lapponica baueri migrate northward from New Zealand toward Asian stopover sites during the boreal spring, with differences in timing between individuals known to relate to their eventual breeding-ground geography in Alaska. Here, we studied the timing of northward migration of individual godwits at three sites spanning 1,100 km of New Zealand’s 1,400-km length. A lack of morphological or genetic structure among sites indicates that the Alaskan breeding population mixes freely across all sites, and larger birds (southern breeders) tended to migrate earlier than smaller birds (northern breeders) at all sites. However, we unexpectedly found that migration timing varied between the sites, with birds from southern New Zealand departing on average 9.4–11 days earlier than birds from more northerly sites, a difference consistent across 4 years of monitoring. There is no obvious adaptive reason for migration timing differences of this magnitude, and it is likely that geographic variation in timing within New Zealand represents a direct response to latitudinal variation in photoperiod. Using resightings of marked birds, we show that immature godwits explore widely around New Zealand before embarking on their first northward migration at age 2–4 years. Thus, the process by which individual migration dates are established appears to involve: (1) settlement by sub-adult godwits at non-breeding sites, to which they are highly faithful as adults; (2) a consequent response to environmental cues (i.e., photoperiod) that sets the local population’s migration window; and (3) endogenous mechanisms, driven by breeding geography, that establish and maintain the well-documented consistent differences between individuals. This implies that behavioral decisions by young godwits have long-lasting impacts on adult annual-cycle schedules, but the factors guiding non-breeding settlement are currently unknown.
Shorebirds wintering in Southeast Asia demonstrate trans-Himalayan flights
(Springer Nature Limited, 11/12/2020) Li D; Davidson G; Lisovski S; Battley PF; Ma Z; Yang S; How CB; Watkins D; Round P; Yee A; Srinivasan V; Teo C; Teo R; Loo A; Leong CC; Er K
Many birds wintering in the Indian subcontinent fly across the Himalayas during migration, including Bar-headed Geese (Anser indicus), Demoiselle Cranes (Anthropoides virgo) and Ruddy Shelducks (Tadorna ferruginea). However, little is known about whether shorebirds migrate across the Himalayas from wintering grounds beyond the Indian subcontinent. Using geolocators and satellite tracking devices, we demonstrate for the first time that Common Redshanks (Tringa totanus) and Whimbrels (Numenius phaeopus) wintering in Singapore can directly fly over the Himalayas to reach breeding grounds in the Qinghai-Tibet Plateau and north-central Russia, respectively. The results also show that migratory shorebirds wintering in Southeast Asia can use both the Central Asian Flyway and the East Asian-Australasian Flyway. For Redshanks, westerly-breeding birds crossed the Himalayas while more eastern breeders migrated east of the Himalayas. For Whimbrels, the individual that crossed the Himalayas was probably from a different breeding population than others that migrated coastally up the East Asian-Australasian Flyway. The minimum required altitude of routes of trans-Himalayan Redshanks were no higher on average than those of eastern migrants, but geolocator temperature data indicate that birds departing Singapore flew at high elevations even when not required to by topography, suggesting that the Himalayan mountain range may be less of a barrier than assumed.
Variable breeding success and its implication in the conservation of endangered yellow-eyed penguin (Megadyptes antipodes) at the New Zealand subantarctic Auckland Islands
(John Wiley and Sons, Inc., 2024-04-19) Muller CG; Chilvers BL; French RK; Battley PF
Knowledge of breeding success is essential for conservation, as it is required for monitoring populations and survival trends. Seabird reproductive success can be negatively affected by prey availability, marine-based stochasticity, extreme weather events, individual breeders' performance and direct threats such as disease, predation and fisheries interactions. The endangered yellow-eyed penguin (Megadyptes antipodes) is declining in mainland New Zealand, however, little is known about its breeding success in the subantarctic where the majority of the species breeds. Yellow-eyed penguin breeding success data were collected from a total of 167 nests on subantarctic Enderby Island, Auckland Islands, New Zealand, from the 2015 to 2017 breeding seasons. This included egg and chick mortality and fledging rates, plus a wider sample of the fledgling condition of 276 chicks. Fledging success was higher than in mainland New Zealand in some years, although chicks were smaller and lighter on average, highlighting the need for more information on juvenile survival probabilities in the subantarctic. Breeding success measures were similar in 2015 and 2016, but a large egg mortality in 2017 caused a significant reduction in breeding success that year. Such variability requires more investigation into the correlates of breeding success, including possible stressors such as foraging success, adverse weather and environmental effects, and pathogens. These results demonstrate the need for ongoing monitoring of yellow-eyed penguin breeding success across the subantarctic in order to establish baselines for normal variation and to determine whether anthropogenic (manageable) factors may be contributing to low productivity. This research highlights an important consideration for endangered species conservation; that breeding success may not be consistent over time, or across a species' entire range. Additional monitoring of all breeding populations should be carried out to ensure up-to-date information is available to inform conservation management decisions for the species.
Winter habitat use of New Zealand falcons (Falco novaeseelandiae ferox) in an intensively managed pine plantation, central North Island, New Zealand
(New Zealand Ecological Society, 15/07/2017) Horikoshi C; Battley PF; Seaton R; Minot EO
Deforestation and conversion to intensive agriculture historically caused a large reduction in abundance of the New Zealand falcon, resulting in its current classification as At Risk. Many New Zealand falcons occur in managed plantation forests, but little is known about their winter use of the mosaic of different aged stands present in these forests. We radio tracked adult falcons (n = 36) during three winters (2012–2014) in Kaingaroa Forest, an intensively managed pine plantation located in the Central Plateau of the North Island of New Zealand. We used tracking data to establish the extent and habitat composition of winter home ranges, and transect surveys to assess the availability of potential prey (passerine birds). We also investigated whether falcon habitat use was related to weather. Open fields created by clearcutting were the primary hunting ground of falcons. Falcons occupied young pine stands (30.4%) and the ecotone between young and mature pine stands (31.2%) most frequently despite its limited availability (20.1% and 3.7%, respectively). Total prey abundance was similar across all habitats and sizes of open fields, but the species composition of potential prey differed significantly between habitats. Thus, the dynamic changes to forest structure created by clearcutting and its effects on prey accessibility are the most important factors influencing falcon space use. We observed that falcons used the mature portion of the forest edge area as a vantage point for hunting or for territorial defence and as a shelter from heavy rain, and interiors of mature tree stands as a shelter from strong winds. Females had larger home range size (95% KDE, 32 km2) than males (15 km2). The availability of mature/young edge within a home range may be the key factor determining home range size during winter. Maintaining the availability of ecotones of young stands adjacent to mature trees in plantation forests can assist in supporting falcon populations in this novel habitat and hence the conservation of this endemic raptor.

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